NDA@SZTAKI

Guidelines for the selection of functional assays to evaluate the hallmarks of cancer

Menyhárt, Otília

Harami-Papp, Hajnalka

Sukumar, Saraswati

Schäfer, Reinhold

Magnani, Luca

Győrffy, Balázs

Elsevier

2016

QH3011 Biochemistry / biokémia

RC0254 Neoplasms. Tumors. Oncology (including Cancer) / daganatok, tumorok, onkolĂłgia

The hallmarks of cancer capture the most essential phenotypic characteristics of malignant transformation and progression. Although numerous factors involved in this multi-step process are still unknown to date, an ever-increasing number of mutated/altered candidate genes are being identified within large-scale cancer genomic projects. Therefore, investigators need to be aware of available and appropriate techniques capable of determining characteristic features of each hallmark. We review the methods tailored to experimental cancer researchers to evaluate cell proliferation, programmed cell death, replicative immortality, induction of angiogenesis, invasion and metastasis, genome instability, and reprogramming of energy metabolism. Selecting the ideal method is based on the investigator's goals, available equipment and also on financial constraints. Multiplexing strategies enable a more in-depth data collection from a single experiment — obtaining several results from a single procedure reduces variability and saves time and relative cost, leading to more robust conclusions compared to a single end point measurement. Each hallmark possesses characteristics that can be analyzed by immunoblot, RT-PCR, immunocytochemistry, immunoprecipitation, RNA microarray or RNA-seq. In general, flow cytometry, fluorescence microscopy, and multiwell readers are extremely versatile tools and, with proper sample preparation, allow the detection of a vast number of hallmark features. Finally, we also provide a list of hallmark-specific genes to be measured in transcriptome-level studies. Although our list is not exhaustive, we provide a snapshot of the most widely used methods, with an emphasis on methods enabling the simultaneous evaluation of multiple hallmark features. © 2016 The Authors

angol

Article

PeerReviewed

info:eu-repo/semantics/article

text

http://real.mtak.hu/46795/1/2016_BBA.pdf

Menyhárt, Otília and Harami-Papp, Hajnalka and Sukumar, Saraswati and Schäfer, Reinhold and Magnani, Luca and Győrffy, Balázs (2016) Guidelines for the selection of functional assays to evaluate the hallmarks of cancer. BIOCHIMICA ET BIOPHYSICA ACTA-REVIEWS ON CANCER, 1866 (2). pp. 300-319. ISSN 0304-419X

http://real.mtak.hu/46795/

http://dx.doi.org/10.1016/j.bbcan.2016.10.002

MTMT:3173281; doi:10.1016/j.bbcan.2016.10.002